would have exactly 1 notes file generated by Zotfile.

The only thing I remember I did to this file was using the Export pdf function of zotero, so that I can use zotfile to extract annotations. However I just tried that again on a new file but the cut of

To be clear, just disabling ZotFile wouldn't affect this. You would have to have shortened or deleted the note.

OK I just disabled Zotfile and it seems to synced now.

But Zotero's new PDF reader, in addition to supporting its own native annotations, will also extract annotations made in external PDF readers, just like ZotFile. (It doesn't currently have an option t

Do you advise I uninstall Zotfile?

It looks like that's a note with an extracted table of contents (?) via ZotFile. I'm not sure whether you have anything else in it, but it's too long to sync, and you'll need to shorten it.

If you're using the iOS beta, you should be using Zotero's new PDF reader, not ZotFile.

However when I try and extract the citations on my desktop using Zotfile:

This was likely caused by the ZotFile plugin.

Note that ToC (bookmark) extraction is a ZotFile feature, not a Zotero feature.

ZotFile should do this automatically in many scenarios (esp. when importing metadata with attached PDF from the web) but it doesn't automatically move/rename files when they were added as PDFs and Zot

the file to be stored in the location defined in ZotFile Preferences.

Then, the ZotFile preferences are what's relevant here. The Zotero files and folders preferences do not actually contradict them: One of them is for the data directory, which doesn't just include stor

This is a hard to decide question for a users. Have no human readable file format for PDFs or no access via iOS. One alternative could be to use Zotfile to store PDFs to defined folder and then use an

I am new to zotero and want to use it to database a large collection of PDFs in the usual way, but also, an even larger collection of JPG files. Would like these JPG files to be moved to a specific dr

When I download a PDF from the web, my workflow to import it into Zotero is as follows, which is a mix of raw Zotero and ZotFile:

much of all the functionality I get out of using zotfile to deal with my pdf annotations :)

This is a ZotFile issue. I created a pull request with a fix:

Zotfile's ability to use the number in the "pages" field as the first page number for the citation in annotations extracted doesn't seem to work with Item type "Case". If I convert this into a journal