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Thanks adamsmith, I really appreciate your promptness in helping me fix all my issues! I am aware that NSF doesn't include PMID, but it's another style I tried to see how things were working, if just the NLM style was a problem, or others too. Anyw…
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It shut down Firefox.
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Sorry for another tidbit I should have added before: getting repeated Firefox crashes on importing the huge XML file, I decided to run a test with a tiny xml file made up of 1 entry only. Not being familiar with the format, the tiny file I created …
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Instead the .bib file is only 12 Mb in size: no crash during importing.
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Hi, good catch, I was not precise enough. "Send to-->citation manager" has a cap of 200 articles that can be processed at a time. Since I have >7000 I don't want to repeat the process 35 times and reassemble everything. So instead, I chose to…
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Thanks, got the file! I've encountered some issue being forced to migrate from Refworks to Zotero. You can read how I figured a solution to my problem here: https://forums.zotero.org/discussion/comment/262323/#Comment_262323 I basically started fr…
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...I should have mentioned that usage of the xsl script was explained here, and this really helped me: http://www.genomearchitecture.com/2014/06/how-to-convert-pubmed-references-to-bibtex
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Hello, Here is the process from the beginning: 1-Refworks exported text file parsed in Excel (Perl would have been more efficient but much longer for me to code) to retrieve the information needed by Pubmed's Batch Citation Matcher: journal_title|ye…
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Hello Thanks both for your help. I tried to import the large pubmed XML file, and also a test file with a single reference. They both fail, Zotero giving me a "The selected file is not in a supported format." message... Is this where I am supposed …
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Unfortunately, I don't...I really should have checked all this before my access got cancelled....mea culpa. From PMIDs, I was able to get Pubmed XML format list for all my 7000 references. I then converted to .bib format using pubmed2bibtex.xsl The…
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Hello, thanks for your reply. For the following reference, when I was using Refworks I was able to cite it in a Word document and have the PMID lsited in the bibliography...unfortunately the PMID number is not in the text export (the DOI and PMCID a…
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...I should have specified that I could search Pubmed with these PMIDs and "Send to citation manager" but there is a limit of 200 that can be processed at a time...
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Update: I figured I that I could get the citations for each of my references, from the backup I made in Refworks. From there, a bit of text parsing (in Excel) allowed me to generate a query I could use in Pubmed Batch Citation Matcher. This allowed …
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Hello granto Did you manage to get the style look like what you wanted? Would you mind posting it, and sharing the link? Thanks! Alex