Citations not active after copying between Google Docs documents
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Are the citations still active in the original document? That is, if you add a new citation there, does it start at 44?
In the new document, if you click on an existing citation, do you see a popup with "Edit with Zotero" in it?
As long as you have the Zotero Connector enabled (which it is if you have the Zotero options in Google Docs), you should be able to copy active citations between Google Docs documents.
Yes, I do see a popup with "Edit with Zotero" for existing citations in the new document. Interestingly enough, this is only the case for citations that Zotero has auto-higlighted in a red color font. Other citations that are in a black font color don't have the "Edit with Zotero" option.
Check to make sure that the citations are active and working in the original document — i.e., that you can click on them, see Edit with Zotero, and get the red bar if you try to edit them. If not, something happened to them and you'll need to reinsert them. If they're still active, try copying to a new document again. If the same thing happens, we'd want to see Debug IDs from the Zotero Connector and Zotero for copying between documents and having them become unlinked.
Don't try to copy a bibliography. A Zotero bibliography is just a representation of the active Zotero citations in the current document. That's not something you need to copy at all, and if you copy a bibliography on its own without citations, it will turn red. (We may be able to show a clearer error message there.)
Just copy your text with citations and insert a new bibliography in the new document.