Syncing Annotated PDFs

I've recently upgraded to 2.0b7.4 and was impressed by how easy it was to set up syncing between my home computer and my office computer, using iDisk/MobileMe as the WebDav server for the pdfs of articles. There is one rub, however.

I use Skim to annotate my pdfs on my home computer and while the pdfs transferred over to my office computer, the annotations didn't. Should annotations transfer? Is this a peculiarity of Skim? Have users who have been annotating texts using Adobe noticed any similar problems?

Needless to say, it would be really helpful to be able to access annotated texts and make annotations from either location.
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