copying and pasting text from one doc to another

I am currently putting my final thesis together, but whenever I copy the text from one doc and paste it into the other, my zotero refs are still showing but their traces are lost and when I click to edit them the bar that opens is empty.

The two docs have the same zotero preferences and are the same word 2007 docs.
Is there anything I can do to fix this or do I need to replace all the refs by new ones in the final doc, which is what I'm currently doing. :/
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