Search in notes, tag references

I have a database where some sort of classification is added via notes. (The library has been imported from Endnote.) Now, the classification should be changed to appropriate tags. I've tried to search for the relevant text in the notes, select the results and tag them in one go (I've added the relevant tags as colored tags so I can add them with a single key stroke.) Unfortunately, this does not work as Ctrl+A will select the notes instead of the items themselves. Is there a way I can easily do this? (I know I can use Javascript for this, but maybe there's an easier solution.)
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