Zotfile PDF sync with iPad; annotations from Zotero's PDF reader not showing up

I've set up a sync between Zotero on desktop and PDF Expert on my iPad using the Zotfile extension. While I can view the annotations I made with PDF Expert in the Zotero PDF reader after fetching them with Zotfile, annotations I made with Zotero's native PDF reader are not showing up in PDF Expert. Can I alter some settings for this to work, or is this impossible with Zotero 6?
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