Zotfile allows you to auto-place files in subfolders it creates - though apparently not sorted by collection

Yes, I looked at ZotFile, but as far as I understand, you have to create the file structure manually…

For that, again, have a look at the Zotfile plugin.

@mronkko: Skipping items with two or more attachments is actually super easy. You just have to change one line in the 'getSelectedAttachments' function (in zotfile.js).

I haven't tried this, but Joscha has been doing some work with highlighting/annotating in Zotfile:

There is already one way in which it works nicely for a non-expert: the Zotfile Reader plugin, which makes it really easy to push stuff to read (e.g. PDFs, ebooks) from Zotero to a tablet and to get u

https://addons.mozilla.org/en-US/firefox/addon/zotfile/versions/

Despite reading "For Zotero Standalone, first download the 1.6.4 extension file from here" (at http://www.columbia.edu/~jpl2136/zotfile.html#install)

I'm not finding zotfile 1.6.4 at your link -- that page goes only up to 1.6.3, which is not compatible with standalone. Do you have a version of the 1.6.4 xpi that we could download directly? (Or do w

http://www.columbia.edu/~jpl2136/zotfile.html#install

Can Zotfile support this use case? I have two libraries with 3000 and 5000 items each. Does the library size cause a problem?

https://addons.mozilla.org/en-US/firefox/addon/zotfile-reader/versions/

Also there is a tool called ZotFile that does some moving of files, but I do not know if it helps in this problem.

You rock! I was just thinking that I wouldn't be able to use Zotero Standalone as my main Zotero tool because there wasn't a version of Zotfile for it.

(for instructions see here and remember to first install zotfile 1.6.4)

Here is a new zotfile version that is compatible with Zotero Standalone. It's currently under review at Mozilla so that you will have to install it from here.

Here is a new beta for 0.5. The extraction of annotations should now work for macs. You have to install the program separately though (ZotFile Pref->ZotReader->Download & Install...). Windows and Linu

@prjohnston: Do you just want to move the pdf attachments to the reader and not the other attachments? If that is the case, the "Attach all files ..." option has nothing to do with it. You have to che

please also post in the Zotfile thread so that Joscha, it's creator, is sure to hear about this issue:

I tried the experimental but extremely useful duplicates removal option [extensions.zotero.debugShowDuplicates] and zotfile stopped working. When I clicked on "change name" or "push to reader", nothin