I don't think that's possible, but maybe it is.

Alternatively, you could avoid Word entirely and use Pandoc to create your bibliography based on Pandoc citekeys inserted into your markdown document. You are probably aware, but if not, the Obsidian Zotero Integration plugin has an autocomplete dialogue for inserting such citekeys. Just type @ to insert a citation, and a dropdown dialogue will autocomplete what you type after @. If this doesn't work, you probably need to update Better Bibtex in Zotero.

Then, you can either use the Pandoc plugin (not maintained for a while, but still works), or the Enhancing Export to export the document with bibliography and everything as PDF or Word or whatever. The Word export will not have citations formatted as fields, as they would be if inserted in Word, so you cannot edit them after exporting.

Pandoc plugin: https://github.com/OliverBalfour/obsidian-pandoc
Enhancing export: https://github.com/mokeyish/obsidian-enhancing-export

There is also the Longform plugin, which can help you combine notes into one document. Alternatively, the Text Transporter plugin makes it easy to transclude or copy blocks into another document.

Longform: https://github.com/kevboh/longform
Text transporter: https://github.com/mokeyish/obsidian-enhancing-export

@Mathunter Sorry for the late response. I hope you have figured out a workflow that works for you! I just wanted to mention that the issue with the autocompletion is being open on GitHub, so it's not just you: https://github.com/mgmeyers/obsidian-zotero-integration/issues/68

Regarding not converting the link to text in Enhancing export compared to the Pandoc plugin, @danieltomasz in the Obsidian Discord shared a solution using Lua filters for Pandoc there today:

---

I wrote a proof of concept filter that do that (past discussion in the previous link) :

Proof of concept of naive Lua filter removing wikilinks (should be the same effect as the Python script one) , if someone want to try, it should be saved to folder with markdown with Lua extension (for example 'cleanwiki.lua' and flag '--lua-filter=cleanwiki.lua' should be add to pandoc command or the same line as a pandoc_args: to yaml

```
function Str (str)
return (str.text:gsub('%[%[', '')
:gsub('%]%]', ''))
end
```

---

To use it, save it to the Pandoc directory in a subfolder called "filters" (create it if necessary).

Update :
I've tried to apply the method of this video (https://www.youtube.com/watch?v=p5Cs5XsDErE). The result is you can export a word document from a note in your obsidian vault with the citation format you want and a bibliography. But, according to the subject of this post, you CAN'T create the "magic link" in your citation that you have when you cite in word using zotero. So it means that you CAN'T re-upload your bibliography automatically in word if you do some modification after the export from obsidian to word.

So I've look on forums and some articles and I found some new solutions !
1) I find a way to edit everything you need in obsidian. You can put figure and auto number them, auto-number the titles, cite easily and, right at the end, export in word or in PDF. So maybe you don't need to use word at all ! That is a huge step (I don't like word). All the worklow is explained [here](https://medium.com/better-humans/obsidian-tutorial-for-academic-writing-87b038060522) by Leonardo Castorina. (premium access on medium).
2) Thanks to this [article](https://medium.com/@alexandraphelan/an-updated-academic-workflow-zotero-obsidian-cffef080addd) by Alexandra Phelan (premium access on medium too) it offers different ways to do it if you struggle with the previous article. It also gives you a good philosophy to use zotero.

So I didn't solve my first problem but the system (zotero x obsidian) I use now please me very much ! I import everything that interested me in obsidian and if I want to go back in the original file in zotero I have the link to the exact location. I write my manuscript in obsidian and wait the very end to export it in PDF. If I need very specific formatting, I export it to Word and finish the formatting here.

I hope this could help someone else. It's thanks to dozen of post like this one that I succeed in finding my system.

Cheers

Glad to see it help !

@juant Yes I agree ! Obsidian to word is much more convenient if you have some teacher or master who want to add modification to your paper.
If you find a way I will be glad to learn from it and I'm sure other people will as well !
We keep in touch !

> Luckily it uses the same obsidian plugin that I have described before (Enhancing export plugin) so it's very easy to install if you have try my way of doing

Just for clarification, you don't actually need the Enhancing export for this, it works plain Pandoc as well. But yeah, it works through Enhancing export, just as any other Pandoc argument.